Group sequences by sample index combination

Usage

do_demux(
  primer_search_fq,
  out_dir,
  sample_tab,
  error_threshold = 2.5,
  min_barcode_length = 50
)

primer_search_fq: One or multiple paths from do_primer_search (trimmed_fq entry in the returned list).

sample_tab with a reads_path column and additional rows for samples found in the reads but not in the sample table

See do_trim_demux for details on the other arguments

The read files in out_dir are named as follows: fprimer-fidx--rprimer-ridx.fastq.gz

Requires seqtool v0.4 or higher