stat

Return per-sequence statistics as tab delimited list

Sequence statistics variables (seqlen, exp_err, charcount(...), etc.) are supplied as comma-delimited list, e.g. id,seqlen,exp_err. The stat command is equivalent to st pass --to-tsv 'id,var1,var2,...' input

See st stat -V/--help-vars for a list of all possible variables.

Usage: st stat [OPTIONS] <VAR> [INPUT]...

Options:
  -h, --help  Print help

'Stat' command options:
  <VAR>  Comma delimited list of statistics variables

See this page for the options common to all commands.

st stat <variables> is a shorter equivalent of st pass --to-tsv id,<variables>.

Example:

st stat seqlen,gc_percent seqs.fasta

Example output:

seq1    291 50.51546391752577
seq2    297 57.57575757575758
...