pass

Directly pass input to output without any processing, useful for converting and attribute setting

Usage: st pass [OPTIONS] [INPUT]...

Options:
  -h, --help  Print help

See this page for the options common to all commands.

The pass command does nothing to the sequence records, it just passes them directly to the output. Still, this is an useful command for the following:

• Format conversion
• Editing header attributes

Examples

Convert GZIP-compressed FASTQ to FASTA:

st pass input.fastq.gz -o output.fasta

equivalent, shorter notation:

st . input.fastq.gz -o output.fasta

More

This page lists examples with execution times compared to other tools.